LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-363-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125845-125871
0.007
1
7mer
266805-266830
0.006
2
7mer
54020-54033
0.006
2
8mer
252561-252583
0.006
Not Conserved
7mer
129878-129896
0.006
1
7mer
64029-64043
0.004
1
6mer
254507-254519
0.004
9
7mer
147018-147045
0.004
3
7mer
155435-155443
0.004
1
8mer
99341-99357
0.004
0
7mer
72895-72911
0.004
1
7mer
69735-69750
0.003
1
8mer
256627-256644
0.003
0
7mer
24883-24905
0.003
0
7mer
203620-203631
0.003
0
6mer
163235-163250
0.003
4
6mer
161323-161344
0.003
4
7mer
218298-218318
0.003
1
8mer+wobble
265509-265530
0.003
Not Conserved
7mer
11197-11208
0.003
0
6mer
222173-222184
0.003
6
7mer
226178-226196
0.003
0
7mer
32176-32190
0.003
1
7mer
110995-111012
0.003
0
6mer
99189-99214
0.002
1
7mer
134696-134710
0.002
0
6mer
150535-150551
0.002
4
7mer
80512-80526
0.002
0
7mer
46493-46506
0.002
1
7mer
204000-204014
0.002
1
6mer
64609-64635
0.002
0
6mer
56539-56556
0.002
2
6mer
57628-57646
0.002
4
6mer
262914-262939
0.002
2
6mer
83341-83361
0.002
Not Conserved
6mer
145406-145417
0.002
1
6mer
89402-89426
0.002
1
6mer
239000-239007
0.002
0
6mer
240121-240129
0.002
0
7mer
27282-27296
0.002
1
7mer
28030-28046
0.002
1
7mer
157408-157422
0.002
0
6mer
151210-151225
0.002
1
7mer
253783-253805
0.002
Not Conserved
8mer
76058-76070
0.002
0
6mer
212992-213002
0.002
0
6mer
40449-40471
0.002
1
7mer
201715-201729
0.002
Not Conserved
7mer
135987-136010
0.002
0
6mer
9872-9898
0.002
4
7mer
131109-131123
0.002
1
6mer
219421-219441
0.002
0
6mer
175614-175639
0.002
2
7mer
77599-77613
0.002
0
7mer
9502-9515
0.002
Not Conserved
6mer
130422-130439
0.002
2
6mer
86649-86674
0.002
3
6mer
67130-67140
0.002
1
6mer
193173-193199
0.002
0
6mer
200125-200147
0.002
1
6mer
232541-232545
0.002
0
7mer
115331-115345
0.002
0
6mer
87211-87230
0.002
0
6mer
255379-255392
0.002
1
6mer
78580-78606
0.002
1
7mer
100093-100110
0.002
2
7mer
247358-247372
0.002
0
6mer
265099-265115
0.002
1
7mer
97091-97105
0.002
1
6mer
233232-233258
0.002
0
7mer
227180-227194
0.002
0
6mer
136453-136466
0.002
1
6mer
236833-236848
0.002
0
7mer
18822-18836
0.002
0
6mer
94874-94887
0.001
0
6mer
210703-210717
0.001
2
6mer
256307-256316
0.001
0
7mer
204000-204022
0.001
1
6mer
102428-102452
0.001
1
6mer
133057-133071
0.001
1
6mer
112617-112640
0.001
0
6mer
183884-183892
0.001
1
6mer
227985-228005
0.001
2
6mer
139838-139851
0.001
0
6mer
98111-98124
0.001
0
6mer
110319-110342
0.001
Not Conserved
6mer
105468-105481
0.001
0
6mer
90153-90166
0.001
0
6mer
17699-17725
0.001
0
6mer
197495-197522
0.001
1
6mer
137825-137845
0.001
Not Conserved
6mer
30598-30615
0.001
0
8mer+wobble
14831-14847
0.001
0
6mer
69192-69218
0.001
0
7mer
125944-125958
0.001
0
6mer
256102-256128
0.001
0
6mer
232909-232932
0.001
1
6mer
77649-77662
0.001
0
6mer
161337-161359
0.001
0
6mer
27332-27345
0.001
0
6mer
112629-112655
0.001
0
6mer
134746-134759
0.001
1
RP11-34P13.13
hsa-miR-363-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4792-4806
0.032
1
7mer
3867-3881
0.016
1
7mer
439-453
0.009
0
6mer
4743-4756
0.008
0
6mer
4438-4449
0.008
0
7mer
3021-3035
0.006
0
7mer
1409-1423
0.005
0
7mer
3296-3320
0.004
0
RP11-244B22.6
hsa-miR-363-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1028-1053
0.064
0
6mer
1287-1303
0.012
0
6mer
1336-1361
0.010
0
LINC00293
hsa-miR-363-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518962
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-352
0.081
1
LINC00293
hsa-miR-363-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-490
0.064
1
7mer
1125-1141
0.016
0
AP005530.2
hsa-miR-363-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000572608
Biotype: lincRNA
Gene id: ENSG00000263305
Gene Name: AP005530.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-503
0.080
0
XLOC_009798
hsa-miR-363-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020465
Biotype: transcript isomorph
Gene id: XLOC_009798
Gene Name: XLOC_009798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-411
0.045
0
7mer
389-403
0.034
0
LLNLR-470E3.1
hsa-miR-363-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619715
Biotype: sense_intronic
Gene id: ENSG00000273837
Gene Name: LLNLR-470E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-383
0.078
1
RP11-631M21.1
hsa-miR-363-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562162
Biotype: lincRNA
Gene id: ENSG00000260370
Gene Name: RP11-631M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-283
0.076
0
RP11-114H24.6
hsa-miR-363-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562716
Biotype: antisense
Gene id: ENSG00000259792
Gene Name: RP11-114H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-459
0.076
1
KCNQ1OT1
hsa-miR-363-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85275-85302
0.009
6
7mer
72642-72661
0.006
1
6mer
43975-43985
0.005
6
7mer
29202-29216
0.004
0
7mer
19292-19305
0.003
0
6mer
67936-67959
0.003
0
6mer
12548-12563
0.003
1
6mer
28724-28733
0.003
0
6mer
36258-36266
0.002
0
6mer
69325-69329
0.002
Not Conserved
6mer
22203-22214
0.002
0
6mer
41688-41702
0.002
0
6mer
7560-7582
0.002
1
6mer
51338-51360
0.002
1
6mer
26775-26800
0.002
0
6mer
38126-38146
0.002
0
6mer
67717-67735
0.002
1
6mer
25582-25598
0.002
Not Conserved
6mer
72314-72335
0.002
1
6mer
5673-5691
0.002
Not Conserved
6mer
7310-7336
0.002
0
6mer
67268-67279
0.002
1
6mer
51142-51164
0.001
1
6mer
60394-60419
0.001
0
6mer
37184-37200
0.001
0
6mer
37529-37555
0.001
0
6mer
60274-60291
0.001
0
6mer
25415-25440
0.001
1
6mer
13930-13956
0.001
Not Conserved
6mer
33759-33781
0.001
Not Conserved
6mer
71981-71999
0.001
0
RP11-445O3.3
hsa-miR-363-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2514-2531
0.043
0
7mer
873-886
0.016
0
6mer
1924-1940
0.008
0
6mer
1772-1784
0.006
0
XLOC_013174
hsa-miR-363-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1477-1499
0.045
0
7mer
1136-1150
0.026
0
XLOC_013274
hsa-miR-363-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-47
0.035
1
6mer
370-383
0.019
1
6mer
156-165
0.017
1
MIR6818
hsa-miR-363-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9524-9537
0.007
8
7mer
21016-21038
0.004
1
6mer
26389-26412
0.003
4
6mer
10221-10246
0.003
2
6mer
9194-9220
0.003
2
6mer
33333-33356
0.003
4
7mer
5807-5816
0.002
0
6mer
16613-16626
0.002
5
6mer
18358-18378
0.002
3
6mer
2950-2954
0.002
4
6mer
21677-21694
0.002
1
6mer
17455-17481
0.002
2
7mer
39750-39764
0.002
0
6mer
7346-7365
0.002
4
6mer
35958-35970
0.002
1
7mer
36943-36964
0.002
1
6mer
27221-27243
0.002
2
6mer
1710-1734
0.002
3
6mer
8618-8639
0.002
3
7mer
45311-45325
0.002
1
6mer
11591-11613
0.002
1
6mer
16046-16050
0.002
2
7mer
3221-3235
0.002
0
7mer
1680-1685
0.002
4
6mer
41112-41123
0.002
2
7mer
6512-6526
0.002
0
6mer
14460-14464
0.002
0
6mer
11196-11209
0.001
0
6mer
27884-27907
0.001
0
7mer
36913-36937
0.001
0
6mer
1655-1665
0.001
1
6mer
9186-9207
0.001
0
6mer
20975-20988
0.001
0
RP11-379B18.5
hsa-miR-363-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000617582
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-24
0.067
3
RP11-90D4.3
hsa-miR-363-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539795
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-571
0.067
3
RP11-90D4.3
hsa-miR-363-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535746
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-572
0.067
3
CTD-2332E11.2
hsa-miR-363-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598116
Biotype: lincRNA
Gene id: ENSG00000268560
Gene Name: CTD-2332E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-239
0.065
0
PCAT19
hsa-miR-363-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
309-324
0.027
1
7mer
273-297
0.027
1
6mer
42-63
0.011
1
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